Principal Investigators
Nuno BandeiraVineet Bafna
Ingolf Krueger
Pavel Pevzner
Post Docs
Christina BoucherXiaowen Liu
Software Developers
Claudiu Farcas, Project ScientistJoão Canhita
Jeremy Carver
Ian Kaufman
Graduate Students
Laurence BernsteinFjola Bjornsdottir
Stefano Bonissone
Jonathan Brackbill
Jocelyne Bruand
Natalie Castellana
Adrian Guthals
To-Ju Huang
Kyowon Jeong
Sangtae Kim
Yoona Kim
Ilya Kolykhmatov
Hosein Mohimani
June Snedecor
Jian Wang
Mingxun Wang
Collaborators
Steve Briggs, BiologyPieter Dorrestein, Pharma
Bill Gerwick, Scripps (SIO)
David Herold, Pathology
Vivian Hook, Pharma
Trey Ideker, Bioengineering
Richard Klemke, Cancer Center
Eduardo Macagno, Biology
Huilin Zhou, Molecular Medicine
Former Lab Members
Dumitru BrinzaBanu Dost
Ari Frank
Nitin Gupta
Julio Ng
Sam Payne
Stephen Tanner
Latest Releases
ProteoSAFe
GenoMS
Inspect, MS-Alignment
Meta-SPS
MixDB
MS-Clustering
MS-Dictionary
MS-GappedDictionary
MS-GeneratingFunction
MS-GFDB
MS-GF+
M-SPLIT
PepNovo
Spectral Networks
UniNovo
Media Coverage
Nonribosomal Peptide Dereplication and Sequencing (Scientific American, Genetic Engineering News, Natural Products Industry Insider and Genome Web Daily News)
A powerful tool for PTM discovery (Jan 2008, Journal of Proteome research, Vol 7. Issue 1)
From spectral networks to shotgun sequencing (June 2007, Nature Methods, Vol. 4 No. 6)
Identifying peptides without a database (May 2007, Journal of Proteome Research)
UCSD Computer Scientist Wins Young Investigator Award, Research on Snake Venom Proteins Highlighted (Nov 2006, UCSD)