MS-GF+
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Contact: Sangtae Kim [sak008 (at) eng.ucsd.edu]
Summary
- MS-GF+ is a new MS/MS database search tool that is sensitive (it identifies more peptides than other database search tools and as many peptides as spectral library search tools) and universal (works well for diverse types of spectra, different configurations of MS instruments and different experimental protocols).
- MS-GF+ supports the HUPO PSI standard input (mzML) and output (mzIdentML).
Documentation (MS-GF+)
MS-GF+ Documentation (ChangeLog)Downloads
Publications
MS-GF+: Universal Database Search Tool for Mass Spectrometry
Sangtae Kim, and Pavel A. Pevzner
submitted
The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search.
Sangtae Kim, Nikolai Mischerikow, Nuno Bandeira, J. Daniel Navarro, Louis Wich, Shabaz Mohammed, Albert J. R. Heck and Pavel A. Pevzner
Mol Cell Proteomics. 2010 Dec;9(12):2840-52.
Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases.
Sangtae Kim, Nitin Gupta, and Pavel A. Pevzner
J Proteome Res. 2008 Aug;7(8):3354-63