org.systemsbiology.jrap.stax
Class Scan

java.lang.Object
  org.systemsbiology.jrap.stax.Scan

All Implemented Interfaces:

java.io.Serializable

public final class Scan
extends java.lang.Object
implements java.io.Serializable

A simple class to hold the contents of a scan from a MSXML file. This is a start. For those who want to get more fancy you should only have to modify the SAX2ScanHandler to replace this.

See Also:

Serialized Form

Field Summary

double[]	doubleIntensityList
double[]	doubleMassList No matter 32-bit m/z or 64 bit m/z return as a double list Support for mzML
ScanHeader	header
protected double[][]	massIntensityList No matter 32-bit or 64-bit peak pair, return as double list.

Constructor Summary

Scan()

Method Summary

double[]	getDoubleIntensityList()
double[]	getDoubleMassList()
ScanHeader	getHeader()
double[][]	getMassIntensityList()
void	setDoubleIntensityList(double[] newValue)
void	setDoubleMassList(double[] newValue)
void	setHeader(ScanHeader header)
void	setMassIntensityList(double[][] massIntensityList)
java.lang.String	toString() String respresentation of a Scan object.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

header

public ScanHeader header

massIntensityList

protected double[][] massIntensityList

No matter 32-bit or 64-bit peak pair, return as double list. Support mzXML

doubleMassList

public double[] doubleMassList

No matter 32-bit m/z or 64 bit m/z return as a double list Support for mzML

doubleIntensityList

public double[] doubleIntensityList

Constructor Detail

Scan

public Scan()

Method Detail

setHeader

public void setHeader(ScanHeader header)

getHeader

public ScanHeader getHeader()

setDoubleMassList

public void setDoubleMassList(double[] newValue)

getDoubleMassList

public double[] getDoubleMassList()

setDoubleIntensityList

public void setDoubleIntensityList(double[] newValue)

getDoubleIntensityList

public double[] getDoubleIntensityList()

setMassIntensityList

public void setMassIntensityList(double[][] massIntensityList)

getMassIntensityList

public double[][] getMassIntensityList()

toString

public java.lang.String toString()

String respresentation of a Scan object. Note: This is most likely not an optimal way to build the string. Hopefully this method will only be used for testing.

Overrides:

toString in class java.lang.Object