Package org.systemsbiology.jrap.stax

Class Summary
Base64 Encodes and decodes to and from Base64 notation.
Base64.InputStream A Base64#InputStream will read data from another InputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.
Base64.OutputStream A Base64#OutputStream will write data to another OutputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.
DataProcessingInfo DataProcessingInfo contains information about what settings and software were used to process the data contained in an mzXML file.
FileHeaderParser  
IndexParser  
MLScanAndHeaderParser  
MSInstrumentInfo The MSInstrumentInfo class contains information about the MS instrument used for a certain MzXML file.
MSOperator MSOperator provides information on who operated the hardware used to acquire data.
MSXMLParser A generic utility class for reading an MSXML file in a random access fashion and utilizing a stored scan index for fast reads.
MZXMLFileInfo MZXMLFileInfo is a class that contains all information from the header of an MzXML file that is constant for the entire file.
ParentFile The ParentFile class contains information about parent files of an mzXML file.
Scan A simple class to hold the contents of a scan from a MSXML file.
ScanAndHeaderParser  
ScanHeader ScanHeader is a class that contains all information associated with a Scan, except for the actual peakList.
SoftwareInfo SoftwareInfo represents data that is available on software that has processed a mzXML file.
TestParser A demo program which uses the MSXMLParser to read in scans from a file you specify on the command line.