Splice Graph Proteomics Tools (Beta)
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Contact: Sunghee Woo [suwoo (at) ucsd.edu]
Summary
The advent of inexpensive RNA-Seq technologies and other deep sequencing technologies for RNA has the promise to radically improve genomic annotation, providing information on transcribed regions and splicing events in a variety of cellular conditions. Using MS based proteogenomics, many of these events can be confirmed directly at the protein level. However, the integration of large amounts of redundant RNA-seq data and mass spectrometry data poses a challenging problem. Our tool addresses this by construction of a compact database that contains all useful information expressed in RNA-seq reads.Documentation
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