Contacts

The CCMS Team

The Center for Computational Mass Spectrometry brings together a diverse team to solve computational and algorithmic problems in proteomics mass spectrometry.

CCMS Leadership

Principal Investigator

Principal Investigator

Vineet Bafna

Email: vbafna@cs.ucsd.edu
Phone: 858-822-4978
Office: Computer Science and Engineering
#4218 EBU3b (CSE Bldg.)
9500 Gilman Drive
La Jolla, CA 92093-0404
Executive Director, Principal Investigator

Executive Director, Principal Investigator

Nuno Bandeira

Email: bandeira@ucsd.edu
Phone: (858) 534-8666
Office: CSE 4210
Computer Science and Engineering
University of California, San Diego
9500 Gilman Drive, Mail Code 0404
La Jolla, CA 92093-0404, USA
Principal Investigator

Principal Investigator

Pavel Pevzner

Email: ppevzner@ucsd.edu
Phone: (858) 524-8666
Office: Department of Computer Science & Engineering
University of California, San Diego
9500 Gilman Drive, EBU3b 4236
La Jolla, CA 92093-0404

CCMS Research Staff

Bioinformatics PhD student

Bioinformatics PhD student

June Snedecor

Email: jsnedeco@ucsd.edu
Phone: 858-534-8865
Office: CSE (EBU3B) 4230
Bioinformatics Graduate Program
University of California, San Diego
9500 Gilman Drive, Dept. 0419
La Jolla, CA 92093-0419
CSE PhD student

CSE PhD student

Adrian Guthals

Email: aguthals@cs.ucsd.edu
Phone: N/A
Office: CSE (EBU3B) 4252
Department of Computer Science and Engineering
University of California, San Diego
9500 Gilman Drive, Mail Code 0404
La Jolla, CA 92093-0404
USA
CSE PhD student

CSE PhD student

Mingxun Wang

Email: miw023 [at] cs [dot] ucsd [dot] edu
Phone: N/A
Office: CSE (EBU3B) 4252
Department of Computer Science and Engineering
University of California, San Diego
9500 Gilman Drive, Mail Code 0404
La Jolla, CA 92093-0404
USA
Bioinformatics PhD student

Bioinformatics PhD student

Laurence Bernstein

Email: lebernstein@ucsd.edu
Phone: T.B.D.
Office: CSE (EBU3B) 4230
Bioinformatics Graduate Program
University of California, San Diego
9500 Gilman Drive, Dept. 0419
La Jolla, CA 92093-0419
CSE PhD student

CSE PhD student

Doruk Beyter

Email: dbeyter [at] ucsd [dot] edu
Phone: 858-534-8865
Office: CSE (EBU3B) 4254
Department of Computer Science and Engineering
University of California, San Diego
9500 Gilman Drive, Mail Code 0404
La Jolla, CA 92093-0404
USA
Bioinformatics PhD student

Bioinformatics PhD student

Stefano Bonissone

Email: sbonisso@ucsd.edu
Phone: 858-534-8865
Office: CSE (EBU3B) 4254
Bioinformatics Graduate Program
University of California, San Diego
9500 Gilman Drive, Dept. 0419
La Jolla, CA 92093-0419
ECE PhD student

ECE PhD student

Seong Cha

Email: s3cha [at] ucsd [dot] edu
Phone: 858-534-8865
Office: CSE (EBU3B) 4256
Department of Computer Science and Engineering
University of California, San Diego
9500 Gilman Drive, Mail Code 0404
La Jolla, CA 92093-0404
USA
Scientific researcher, PhD

Scientific researcher, PhD

Sunghee Woo

Email: suwoo@ucsd.edu
Phone: 858-334-9096
Office: CSE (EBU3B) 4252
Department of Computer Science and Engineering
University of California, San Diego
9500 Gilman Drive, Mail Code 0404
La Jolla, CA 92093-0404
USA
Postdoctoral researcher

Postdoctoral researcher

Jian Wang

Email: jiw006@ucsd.edu
Phone: (858) 822-2496
Office: CSE (EBU3b) 4216
Department of Computer Science and Engineering
University of California, San Diego
9500 Gilman Drive La Jolla, CA 92093-0404, USA
Postdoctoral researcher

Postdoctoral researcher

Seungjin Na

Email: s2na@eng.ucsd.edu
Phone: 858-534-8865
Office: CSE (EBU3B) 4112
Department of Computer Science and Engineering
University of California, San Diego
9500 Gilman Drive, Mail Code 0404
La Jolla, CA 92093-0404, USA

CCMS Staff

Programmer Analyst

Programmer Analyst

Ian Kaufman

Email: ikaufman@ucsd.edu
Phone: 858-534-8865
Office: Jacobs Hall/EBU1 4124
Computer Science and Engineering
9500 Gilman Drive #0404
La Jolla, CA 92093-0404
USA
Programmer/Analyst III

Programmer/Analyst III

Joao Canhita

Email: jcanhita@eng.ucsd.edu
Phone: 858-534-8865
Office: CSE 4222
Computer Science and Engineering
9500 Gilman Drive #0404
La Jolla, CA 92093-0404
USA
Programmer/Analyst III

Programmer/Analyst III

Jeremy Carver

Email: jjcarver@ucsd.edu
Phone: 858-534-8865
Office: CSE 4222
Computer Science and Engineering
9500 Gilman Drive #0404
La Jolla, CA 92093-0404
USA

CCMS Alumni

  • Stephen Tanner group leader, Illumina
  • Samuel Payne Director of Bioinformatics, PNNL
  • Julio Ng staff scientist, Microsoft Research
  • Xiawoen Liu Assistant Professor, University of Indiana
  • Hosein Mohimani staff scientist, Illumina
  • Yoona Kim programmer, Qualcomm
  • Sangtae Kim Staff Scientist, PNNL
  • Kyowon Jeong postdoctoral researcher, Korean National University
  • To-ju Huang software architect, Oracle
  • Claudiu Farcas project scientist, UCSD
  • Banu Dost staff scientist, Google Research
  • Natalie Castellana Chief Technical Officer, Digital Proteomics
  • Jocelyne Bruand staff scientist, Illumina
  • Dumitru Brinza Staff Scientist, Thermo Scientific