MassIVE-KB - Documentation - Browsing
Browsing Spectral Libraries
| View Name | Description |
|---|---|
| View Library - Library Variants | All Library Spectra at 1% local precursor FDR |
| View Library - Library Variants Ambiguity Filtered | Library spectra filtered for ambiguity spectra |
| View Library - Library Variants Ambiguity Filtered 2+ Sequence Protein Filtered | Library spectra filtered to only proteins that included 2 sequences that uniquely mapped to proteins after considering SAAVs |
| Provenance - All Candidate library spectra | View top 100 spectra that were candidates for inclusion in the library for each precursor. Includes provenance links back to original search and spectrum file. |
| Provenance - View All Search Tasks | List of all search tasks that were used to in the construction of library |
| Provenance - View All Library Augments | List of augment tasks that incrementally included more spectra in library throughout time. |
| Provenance - View All Library Spectrum Files | List of all input spectrum files that were searched to be included in spectral library. |
| Protein Results - All Proteins | Protein with FDR calculated from precursors after ambiguity filtered. |
| Ambiguity - Ambiguity Library Results | List of library spectra and the number of identifications for each |
| Library Augmentation - Augment This Library | Link to augment existing library. Takes you to selection page to add new spectra to grow library. |
| Downloads - MGF library | Annotated MGF Library download of full MassIVE-KB library |
| Downloads - sptxt library | Annotated sptxt Library download of full MassIVE-KB library for use with Trans Proteomics Pipeline and Skyline |
| Downloads - Ambiguity Filtered MGF Library | Annotated MGF Library download of full MassIVE-KB library with ambiguously identified spectra filtered out |
| Downloads - Ambiguity Filtered sptxt Library | Annotated sptxt Library download of full MassIVE-KB library with ambiguously identified spectra filtered out |
| Downloads - Ambiguity Filtered 2+ Sequence Protein Filtered MGF Library | Annotated MGF library filtered to only proteins that included 2 sequences that uniquely mapped to proteins after considering SAAVs |