Principal Investigator

Pavel Pevzner

It is impossible to imagine modern biology without computational ideas developed by bioinformatics pioneers in the last two decades. Today, computational molecular biology remains a wild frontier with still unexplored boundaries.

Bioinformatics is often defined as applications of computers in biology. We respectfully disagree: reducing bioinformatics to “applications of computers in biology” diminishes the rich intellectual content of bioinformatics.

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Pavel Pevzner

Contact Info

Email Address: ppevzner@ucsd.edu
Phone Number: (858) 524-8666
Fax: (858) 524-8666
Location: Department of Computer Science & Engineering
University of California, San Diego
9500 Gilman Drive, EBU3b 4236
La Jolla, CA 92093-0404

Key Publications

Deconvolution and database search of complex tandem mass spectra of intact proteins: a combinatorial approach. Liu X, Inbar Y, Dorrestein PC, Wynne C, Edwards N, Souda P, Whitelegge JP, Bafna V, Pevzner PA. Mol Cell Proteomics. 2010 Dec;9(12):2772-82. doi: 10.1074/mcp.M110.002766. Epub 2010 Sep 20.
Top-down proteomics reveals a unique protein s-thiolation switch in the bacterial pathogen salmonella in response to infection-like conditions C. Ansong, S. Wu, M. Da, X. Liu, H. Brewer, L. Brooke, D. Kaiser, Nakayasu E.S., P.A. Cort, J.R.and Pevzner, R.D. Smith, F. Heffron, J.N. Adkins, and L. Pasa-Tolic. Proc Natl Acad Sci U S A, 110:10153--8, 2013.
Protein identification by spectral networks analysis. Bandeira N, Tsur D, Frank A, Pevzner PA. Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6140-5. Epub 2007 Apr 2.
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Research Interests

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I am interested in new approaches to teaching computational molecular biology at both undergraduate and graduate level:

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