Principal Investigator

Pavel Pevzner

It is impossible to imagine modern biology without computational ideas developed by bioinformatics pioneers in the last two decades. Today, computational molecular biology remains a wild frontier with still unexplored boundaries.

Bioinformatics is often defined as applications of computers in biology. We respectfully disagree: reducing bioinformatics to “applications of computers in biology” diminishes the rich intellectual content of bioinformatics.

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Pavel Pevzner

Contact Info

Email Address: ppevzner@ucsd.edu
Phone Number: (858) 524-8666
Fax: (858) 524-8666
Location: Department of Computer Science & Engineering
University of California, San Diego
9500 Gilman Drive, EBU3b 4236
La Jolla, CA 92093-0404

Key Publications

Mass spectrometry-based neuropeptidomics of secretory vesicles from human adrenal medullary pheochromocytoma reveals novel peptide products of prohormone processing. Gupta N, Bark SJ, Lu WD, Taupenot L, O'Connor DT, Pevzner P, Hook V. J Proteome Res. 2010 Oct 1;9(10):5065-75. doi: 10.1021/pr100358b.
Spectral profiles, a novel representation of tandem mass spectra and their applications for de novo peptide sequencing and identification Kim S, Bandeira N, Pevzner PA. Mol Cell Proteomics. 2009 Jun;8(6):1391-400. doi: 10.1074/mcp.M800535-MCP200. Epub 2009 Mar 2.
Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation. Gupta N, Tanner S, Jaitly N, Adkins JN, Lipton M, Edwards R, Romine M, Osterman A, Bafna V, Smith RD, Pevzner PA. Genome Res. 2007 Sep;17(9):1362-77. Epub 2007 Aug 9.
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Research Interests

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I am interested in new approaches to teaching computational molecular biology at both undergraduate and graduate level:

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